According to Politico Europe, authorities sent the crucial email to the private account of Jo Decuyper, the head of the city's railway police, rather than to his official address.
"At that time, I was obviously not sitting in front of my computer," Decuyper was quoted as saying by the Belgian newspaper De Standaard.
Sending emails had become necessary because of disruptions to phone service in and around Brussels after the initial attack. Even authorities had few options apart from communicating via the internet or smartphone services such as WhatsApp.
However, Decuyper told the parliamentary committee that no email could have prevented the explosion, even if he had seen the order on time.
"Even if there was a button to stop everything and to evacuate - which obviously does not exist - it would not have prevented" the blast, Decuyper said.
He said evacuating the metro system under normal circumstances would have taken 30 minutes. Apart from that, federal police ordered the metro to shut down only by noon that day - about four hours after the first explosion at the airport had taken place.
The information about the email error has raised new questions about whether Belgian authorities are up to the challenge of confronting Islamist terrorism in their country.
In an interview with CTC Sentinel magazine in August, Belgian counterterrorism official Alain Grignard openly acknowledged the obstacles authorities were facing.
"We don't have the same resources as US law enforcement agencies, but it's important to point out you can never provide 100 per cent security," he said.
Belgium - a country of 11 million people - has Europe's highest per capita ratio of Isis sympathisers who have gone to Syria or Iraq, and the country's relatively small security services have struggled to address the terror threat.
"Belgium counterterrorism agencies were praised for thwarting the Verviers plot, but luck played its role," Grignard said last year, referring to a terror plot that was disrupted in January last year in the city of Verviers.
"Tomorrow we might not be so lucky," Grignard said.