Laser "rangefinders" enable the archaeologists to measure the size, direction and elevation of the tunnels, in the mountains east of Rome.
The mapping effort is being led by amateur archaeologists with caving expertise from a group called Sotterranei di Roma (Underground Rome).
"The Romans were incredible engineers," said Alfonso Diaz Boj, 52, a Spanish member of the group who led the Sunday Telegraph into an aqueduct near modern-day Mandela.
"To slow down the flow of the water they deliberately built curved sections. Teams of diggers would start from opposite directions and then meet in the middle."
The excavation was carried out by specialist engineers, he added, but the soil would have been removed by slaves. "Ninety per cent of these aqueducts are tunnels - it was much easier to burrow underground than to build channels supported on pylons above ground," he said.
But where the aqueducts emerged from the mountainsides into gorges or valleys, the Romans had no choice but to build bridges to carry the water to the next tunnel. Pick marks left by their tools were clearly visible on the roof of the aqueduct known as the Aqua Claudio.
Its construction began in the reign of the Emperor Caligula in 38AD and was finished in that of the Emperor Claudius, 14 years later. It ran for abut 72 kilometres, from the mountains beyond the modern towns of Tivoli and Frascati.
Other aqueducts extended almost 95km from Rome. The precious supply arrived at one of the ancient city's gates, the Porta Maggiore.
Other archaeologists are going underground in the city itself, exploring the cisterns, drains and tunnels beneath the Roman Forum with the help of a remote-controlled robot.
The six-wheeled "archeo-robot", equipped with two powerful computers, three high-definition cameras and laser sensors, is able to trundle along narrow passageways which are too small or dangerous for humans.
"It's not very nice down there and there's often a build-up of gases, so robots are ideal," said Christopher Smith, director of the British School at Rome, an archaeological research institute established in 1901.
"They're very good for getting into difficult underground areas. There are miles and miles of tunnels beneath sites like the Colosseum, for instance, much of which we know very little about."