Opponents believed the Yanomami were still pursuing a lifestyle from mankind's early past, when people lived mostly peacefully in smaller communities, free from modern sources of stress and far more in balance with their surroundings.
Chagnon's new 500-page book, Noble Savages, is set to reignite the argument. In it he launches an impassioned defence of his work and life among the Yanomami and an equally spirited attack on his critics and fellow scientists. The book's subtitle perhaps sums up his attitude to both groups: "My life among two dangerous tribes - the Yanomam and the anthropologists."
Chagnon describes life in the rainforest spent constructing villages, hunting for food, and, as shamans take powerful hallucinogens, bloody raids on rival groups.
"The most inexplicable thing to me in all of this was that they were fighting over women ... I anticipated scepticism when I reported this after I returned to my university," he wrote.
He was not wrong. His research created a storm and accusations that it allowed Amazonian tribes to be depicted by governments and outside interests as bloodthirsty savages who deserved to lose their land to the developers. Chagnon defends himself from that charge, using much of the book to attack fellow scientists' conclusions and saying that too many anthropologists are ignoring the pursuit of pure research in favour of becoming activists for the civil rights of their subjects.
"In the past 20 or so years the field of cultural anthropology in the United States has come precipitously close to abandoning the very notion of science," he writes.
But Noble Savages has prompted a fresh wave of attacks on Chagnon. Last week a group of anthropologists who have worked with the Yanomami issued a joint statement. "We absolutely disagree with Napoleon Chagnon's public characterisation of the Yanomam as a fierce, violent and archaic people. We also deplore how Chagnon's work has been used - and could still be used - by governments to deny the Yanomam their land and cultural rights."
One of the signatories, Professor Gale Goodwin Gomez of Rhode Island College, who has also spent several decades studying the tribe, told the Observer she was dismayed that Chagnon had published a new book.
"This is just another attempt to grab attention. I have lived in Yanomam villages and have never needed a weapon," she said.
Human rights organisation Survival International, which campaigns on behalf of indigenous peoples, has also attacked Chagnon.
The group also published a statement from Davi Kopenawa, spokesman for a Yanomami group in Brazil, that was critical of Chagnon's core conclusions: "For us, we Yanomam who live in the forest, the anthropologist Napoleon Chagnon is not our friend. He does not say good things, he doesn't transmit good words. He talks about the Yanomam but his words are only hostile."
- Observer