Meanwhile, police said 219 of the most urgent cases had been "triaged" and the rest would be looked at in coming days.
Jones said she had been receiving daily updates from police, who are yet to rule out the possibility that children had been harmed because of the error.
"It is heartbreaking to hear that the police feel that that could be the case," Jones said. "[But] I have absolute confidence in the police and the thorough work they are doing to review all 644 reports."
Jones said Deloitte's audit would also look at what responsibility her department's director-general, Dr Jim Watterson, had for the bungle.
But Premier Annastacia Palaszczuk pointed her finger at the former Liberal National Party Government, who were in caretaker mode before the state election when the program went live in January. The Premier asked why the program had not been properly tested.
A principal raised the alarm on Thursday after checking to see why his reports were not followed up.
School principals had been receiving receipts from the system to let them know when a complaint had been successfully sent, but the coding error meant police never received category three, or lower-tier, reports. The error has since been fixed.
- AAP