Customs data shows 385 Australians travelled to New Zealand and then on to the Cook Islands in July and August. There are no flights operating between Australia and Rarotonga since March 2020, so any remaining Australians on the island would have to return via New Zealand.
Australians were able to visit the Cook Islands when the Trans-Tasman travel bubble was in effect but had to go via New Zealand and spend 14 days there before their flights.
A spokesperson for the Australian Border Force confirmed that travel exemptions were required for Australians to for travel to Rarotonga from New Zealand, however they did not say how many of these travellers held exemptions.
"The Cook Islands and Niue are not included in the quarantine-free travel agreement between Australia and New Zealand," they said.
Of 353,275 outbound travel applications only 210,679 or 60 per cent have been granted.
For Australian travellers applying for under "compassionate grounds", only 63,437 or 44 per cent have been approved.
Australia's travel ban continues to require travellers to apply for "an exemption to leave Australia to a destination other than New Zealand." Although these are not required to leave transit New Zealand, returning Australians risk fines of a minimum $6550.
Air New Zealand's operating flights out of Rarotonga and has so far brought 3000 kiwis home, with one flight scheduled this week on Thursday.
"Between now and 14 September, we plan to operate two flights to accommodate those wishing to return home, while also supporting additional cargo demand."
Meanwhile, Cook Islanders stranded in New Zealand will not be able to return home until Auckland is at Alert Level 2, with all international arrivals to the island suspended.
The Air New Zealand website shows return flights between New Zealand and Rarotonga are available daily from next week, but passengers must check they're eligible to travel without quarantine before they book.
A spokesperson for the airline said that their schedule will be altered should the suspension be extended.
The Cook Islands Alert Level 2 restrictions are in place until 11.59pm on Monday 13 September.
Reporting by Newstalk ZB