"A lot of scientific literature overseas shows the more intensive, robotic-type production, the more clinical signs there are.''
Although robotic milking systems washed the cows, they were not cleaning them well enough, Dr Barrell said.
"We're looking at welfare regulations around this new generation of dairy farms.''
She said she was not saying there was anything wrong with the Van Leeuwen Dairy Group's robotic farms. However, there "seems to be a link'' between intense, highly mechanised farming and M. bovis.
But once it was endemic, it did not matter what farming system was used, she said.
New Zealanders might never know how Mycoplasma bovis got into the country, ministry director of response Geoff Gwyn said. Ministry staff were investigating the possible pathways and a report was due by the end of next month.
Six pathways were being analysed comprehensively. Even if there was strong evidence supporting one of those pathways, it might not be enough to be certain, he said.
Dr Barrell said laboratory staff were carrying out gene sequencing to see which strain of M. bovis was here, which would indicate where it might have come from.
"That will help lead us down the entry pathway.''