The presence of the potentially toxic alga Phormidium has been confirmed in the Cardrona River.
Its presence has prompted the Otago Regional Council (ORC) to warn people (and dogs) to avoid contact with waters in the river.
It was found at ORC's Mt Barker sampling site. Signs have been put up along the river today to warn the public of the risks associated with the algae.
ORC environmental resource scientist Rachel Ozanne said high flows during winter had kept the region's rivers relatively free of Phormidium. However, warmer temperatures since then and the resulting stable flows meant Phormidium had had the opportunity to flourish.
Where Phormidium was obvious in a river, people should assume it was unsafe for their animals to swim in, Ms Ozanne said.