Mr Guy said it was too early to say what the potential impact could be.
"The oyster industry is worth $20 million to $30m, it will have some impact but if you have a look at what has happened in the wild fishery, it has ebbed and flowed for the last couple of decades," he said.
"When you have intensive oyster farming like we've got in these two fish farms it tends to have a greater impact."
MPI biosecurity surveillance and incursion manager Brendan Gould says fresh, good quality New Zealand oysters continue to be safe to eat.
"Bonamia ostreae is a naturally occurring parasite and is difficult to contain and eradicate as it spreads easily through ocean currents and on vessels," he said.
-NZN