"We acknowledge a flow-on effect. But I will not set a royalty that will affect other parts of the industry until I have sat down with them and worked out a workable plan that ensures they remain profitable and that it is fair."
Not all farmers will be captured by the policy because the royalty will vary according to water quality, scarcity, and what it is being used for. The highest charge will be for bottled water taken from pristine aquifers and exported.
Ardern cited her rural background in a bid to quell fears in the agriculture industry about water pricing.
"My point to them would be there is farming in my family. I am committed to working collaboratively with farmers to find a workable solution that ensures that they prosper."
Federated Farmers water spokesman Chris Allen said the Labour leader's pledge to make pricing fair had eased farmers' concerns.
However, he said; "They remain terrified by the potential impacts on farming families, rural communities and the entire economy."
Even a levy of 0.01c per litre would be "eye-watering" for farmers because of the amount of water they used, Allen said.
Business NZ chief Kirk Hope said any water pricing needed to be consistent and apply to all water users.
"It would not be helpful for business to have to operate and make investment decisions in an environment where the cost of water is determined on an ad hoc, changing basis," he said.
The Green Party has also proposed a water charge of 10c a litre for water bottling companies. The rate for other industries would be set after consultation.
Labour's water price would not be so high, Ardern said.
Environment Minister Nick Smith's warning that water levies would cost farmers $600b was based on a charge of 10c per litre - something that neither Labour nor the Greens are proposing.
Ardern denied that the policy was a bid to win back voters who had defected to the Greens. But the policy clearly puts Labour in Green Party territory.
Green Party water spokeswoman Catherine Delahunty welcomed the Labour policy today, while also saying that her party was the only one that required farmers to change their systems to protect the environment.
The Labour water policy also promised changes to farming models, saying that farms near waterways would have to move away from high stocking levels and focus more on "adding value".
It sets a five-year deadline for farmers to fence intensively stocked land near waterways. To assist farmers, Labour would get people on the dole to help with fencing, riparian planting and other measures to improve water quality.
Under National's plans, farmers must fence off dairy cattle and pigs by next year, and deer and beef cattle by 2025 - a slightly longer timeframe than Labour's proposal.
Ardern also promised a "truly swimmable standard" for New Zealand rivers, streams and lakes.
Opposition parties and environment groups say the Government's definition of a river that is safe for swimming is too weak.
"Clean water is the birth-right of all of us," Ardern said.
"I want future generations to be able to swim in the local river, just like I did."
In February, the Government set of goal of making all rivers safe to swim in by 2040.
That means all waterways deeper than 40cm will have to meet the safe standard for E.coli contamination 80 per cent of the time.
The Government denied that it weakened the definition of a "swimmable" river in the new policy, though an independent assessment by Niwa recently confirmed that the standard was "less stringent" than the one it replaced.