Another former skipper, David Pocock, is back in the mix and also slugging it out with Hooper to start as openside.
History suggests Cheika will be reluctant to start Pocock and Hooper together but he may try that as a shock tactic in one of the side's internationals before the World Cup.
Like the Blues, Cheika has a selection problem with the spine of the side at No8, halfback and first five-eighths.
Does he go for the Waratahs combo of Wycliff Palu, Nick Phipps and Bernard Foley he knows all too well? Or does he use these matches to sift the other contenders for that crucial spine in the team?
There are enough of them. Scott Higginbotham, Ben McCalman, Matt Hodgson, Ita Vaea or George Smith are No8 contenders, while Will Genia, Nick White, Nic Stirzaker and at a pinch, utility Matt Giteau, are halfbacks in the frame.
First five-eighths is littered with choice. Foley, Quade Cooper, Giteau, Christian Leali'ifano and Matt Toomua can all play this role and several will also be frontrunners to move out a place as well.
Some time this week Cheika is expected to announce a 35-man squad and it seems Giteau, Smith and Drew Mitchell, who are based in Europe, will be included. Cheika has spoken to the trio and they are all fit.
"They'll be considered for selection for the first game," Cheika said.
How well others fare will be of interest even across this side of the Ditch as we wait to hear the fate of former Chiefs prop Toby Smith, who has been in strong form for the Rebels.
Will there be a recall for James O'Connor, who returned to the Reds this season where he made little impact?
O'Connor is very skilled, but positions have been filled since his exile and it's hard to know where he fits.
Former skipper James Horwill's retention must also be marginal, although his test experience and the lack of other senior locks will help his cause.