"Some of them had to make fairly hard decisions, which could be deemed in their own constituencies as not being in the interests of their union."
The Springboks head coach job will now be decided by the executive council, headed by the SA Rugby president.
The general council also diminished its own importance by agreeing to set up an independent committee to deal with decisions related to South African teams participating in Super Rugby. While SA Rugby has conceded the urgent need for it to update the way it operates, Springboks coach Allister Coetzee has come under the most intense criticism for the performance of the team, a two-time World Cup champion.
Coetzee took over a Springboks team that lost to defending champion New Zealand in the semi-finals of the 2015 Rugby World Cup.
In his first season in charge, South Africa lost at home to Ireland for the first time, in Argentina for the first time, was on the receiving end of its heaviest ever home defeat when it was thumped 57-15 by the All Blacks, and was beaten by lightweight Italy for the first time.
Coetzee's future was not discussed, SA Rugby president Mark Alexander said, but the coach and his backroom staff will have their jobs on the line when a review of their performance begins on Monday.