"Sorry to everyone at Shell V-Power Racing - I've given them a whole lot of work they didn't need but I'll give myself a kick up the arse and come back [today].
"I can't do much about it now - I made a mistake and I have to own it and get on with it but I am just disappointed in myself."
The Red Bull Holden of Jamie Whincup set the fastest time of the day.
David Reynolds was second in the Erebus Holden and Mark Winterbottom third, fresh off announcing he would be leaving Tickford Racing at the end of the season.
Whincup has vowed to assist van Gisbergen find the right set-up for the sister car and yesterday would have been a huge help.
The track surface was a talking point for the second year running. In 2017, the tarmac had just been relaid and there was a film on the top that saw water pool with rain.
Whincup feels that won't be an issue this year but the track is quite different to a year ago and that means quite a big set-up change.
"The car was strong and we're in a good place," Whincup said. "There has been a resurfacing, which is nice. That issue we had down the back straight looks gone.
"We're all trying to run our green tyres as long as possible and they were pretty shagged by the end of it, so that's when mistakes happen."
The signs were positive for McLaughlin before his drama - he and teammate compatriot Fabian Coulthard looked fast on the hard tyre being used at Pukekohe Park this weekend, despite his team struggling to be as dominant on that compound as they have been all season on the soft.
McLaughlin will get another chance to tinker with his set-up with practice this morning before qualifying early afternoon.
Kiwi Andre Heimgartner and Todd Hazelwood also brought out the red flag later in the session.
Today there will be a 20-minute morning practice session before a 20-minute qualifying session and a 70-lap race starting at 4.10pm.
A second 70-lap race is tomorrow. The title will be decided at the season finale in Newcastle at the end of the month.