The New Zealander was on top throughout in the 3000m final. She led by 0.5s at the 1000m mark and had the race under control to be two seconds clear at the 2000m mark.
The individual pursuit isn't on the Olympic programme and Shanks said her win didn't make up for the disappointment of their loss in the team pursuit when they were beaten in the gold medal ride by the Houvenaghel-led Great Britain team. The team's pursuit will be contested in London with the New Zealand trio of Shanks, Lauren Ellis and Jaime Nielsen optimistic of success at the Olympic Games.
"I think we have learned a lot from that," Shanks said. "In the team pursuit, you have to push the boundaries to go faster and that's what we have to do in Olympic year. When you are riding on those limits, sometimes they don't come off but you have to keep pushing the boundaries and hope on race day it comes together."
Shanks' medal was the fourth for New Zealand at the World Cup meeting on the back of the gold won by the men's team pursuit, the silver picked up by the women's pursuiters and Simon van Velthooven also claimed second in the men's kilo time trial.
Van Velthooven, who has been the big improver in the men's sprint programme this year, couldn't add to his tally in the keiran yesterday. The Manawatu rider finished 13th in the B final after the Oceania champion was closed out of any real racing real estate. Earlier he was relegated in the semifinal for not holding his line, after finishing third across the line.
Joanne Kiesanowski enjoyed her first event win on the first day of the women's omnium. The Christchurch professional was eighth in the flying lap, lowering her personal best for a second time in a week to 14.655s. She was 13th in the points race before recording a breakthrough victory with a brilliant ride in the elimination race, holding off world medallist Tara Whitten of Canada in the final sprint.
It proved a disappointing competition for world omnium silver medallist Shane Archbold who was disqualified during the points race. Under the rules he was unable to contest the rest of the programme.