"As I started off I thought 'there's no pain there so maybe something's happened to fix it?'. Then about 5km later reason started to kick in and I thought 'hang on, there's something seriously wrong'.''
Henton completed the stage for his Ascot Park Hotel team before heading to Southland Hospital for X-rays.
"They revealed I was about three or four millimetres away from having the bone come through the skin,'' he said.
Now facing surgery later this week, it's not enough to deter him from remaining on Tour in a support capacity.
"I want to have the operation down here so I can stay and support the guys and do what I can for the team.''
Henton first rode the iconic Tour three years ago and it is now the highlight on his racing calendar.
"I was lying in bed this morning and thought 'maybe I could get on my bike?' but then just as quickly went 'nah','' he said.
"I've trained all year for this and it's my main race for the year so it is hard to end up in this situation but that's racing. The most frustrating thing is I rarely crash and now I've crashed twice in the last three weeks. It's a little bit annoying.''