"I think they've done really well, especially throughout this test match," India captain Mahendra Singh Dhoni said. "It was quite a good test match from the Australia side."
Tendulkar fell tantalisingly close to a 100th international century until Australia captain and part-time offspinner Clarke managed to remove the Indian batting great to prolong his quest for at least another week.
Tendulkar was caught by Hussey after Clarke (1-22) found the outside edge of the "Little Master's" bat and the ball deflected off wicketkeeper Brad Haddin's shoulder to Hussey at first slip.
Tendulkar had been in fine touch throughout the first session and reached his 50 off 89 balls midway through the morning with a clip down to fine leg and appeared to be on target to score the milestone century that has eluded him for 21 innings since the cricket World Cup in March last year.
Tendulkar's next chance to reach the milestone will be during the third test at Perth starting on Friday.
The removal of Tendulkar sparked the collapse of the Indian middle order, with four wickets falling for just 15 runs.
"We knew getting to the new ball was the key for us, it was about trying to contain runs from the 70th to the 80th over," Clarke said. "If we could manage to get a wicket that was a bonus, and fortunately I managed to spin one, which was a miracle for me."
V.V.S. Laxman (66) was out shortly after to a fine delivery by Hilfenhaus which moved slightly off the seam to flick the off stump. It was the veteran's first score over two in his four innings this series. Hilfenhaus then captured Dhoni for two when he chipped the ball back to the bowler from a full-length ball.
James Pattinson (1-106) trapped Virat Kohli (9) lbw the next over.
Zaheer Khan and Ravi Ashwin shared a 56-run partnership in an entertaining cameo that included eight fours and a six, until Siddle had Khan caught by Marsh at point for 35 off just 26 balls.
The previously ineffective Nathan Lyon (1-64) struck shortly after tea by trapping Ishant Sharma lbw for 11.
Hilfenhaus took the match-winning wicket when Lyon caught Ashwin's mistimed hit at mid-wicket.
The collapse came after India had made a bright start to the day, resuming for 114-2.