Motorists are being asked be careful on the roads as heavy rain resulted in large areas of surface flooding on motorways.
A MetService spokeswoman said there was a low pressure system to the west of Auckland that was causing issues.
In just an hour between 2 and 3pm, about 12.5mm of rain fell at Albert Park and 10.5mm fell at Paremoremo.
"There is a band of rain around, it looks quite heavy in areas and there is a moderate thunderstorm risk."
She said that the thunderstorm risk of hitting Auckland was low with Northland likely to face worse weather.