However, a number of schools that have deliberately chosen not to include the targets in protest of national standards.
"They're breaking the law," Ms Tolley said.
"That information will then be used to provide extra help around students, provide targeted professional development for teachers...so if they've have chosen to break the law and don't have the data they won't be able to access that targeted assistance."
Ms Tolley said the ministry was still in touch with the schools attempting to boycott the standards, encouraging them to submit legal charters.
Labour MP Kelvin Davis said the continued defiance from schools said a lot about national standards.
"Parents around the country continue to stand up for their children in the face of threats and intimidation, including the possibility of having Boards of Trustees of high performing schools being overseen by a statutory manager or even being replaced by a commissioner," Mr Davis said.
"It will be interesting to see what tactics the minister pulls out of her hat to force boards of trustees to comply."
- NZPA