Dr Russel Norman and two other Greenpeace protesters face charges after they threw themselves in the sea in front of an oil exploration ship, forcing it to stop its seismic blasting work.
The group are being charged under a 2013 Amendment to the Crown Minerals Act, dubbed the "Anadarko Amendment", which was put in place to stop protests at sea around oil exploration.
The law change makes it an offence to interfere with or get closer than within 500m of an offshore ship involved in oil exploration, with a potential fine of $10,000.
In addition, interfering with the operations of such a ship is punishable by up to 12 months' jail time or a fine of up to $50,000.
The protesters have been charged by New Zealand Petroleum and Minerals, a division of the Ministry of Business, Innovation and Employment. This is the first time the amendment has been enforced.