Half of the trains on the Wairarapa line arrived late last month, according to performance figures released recently by Tranz Metro.
Wairarapa line trains arriving within five minutes of their scheduled arrival time fell from 68 per cent in March to 50 per cent in April.
In comparison, 85 per cent of Hutt Valley trains and 94 per cent of Kapiti trains were on time in April.
A spokeswoman for the Greater Wellington Regional Council said the drop in punctuality was due to speed restrictions which were in place on sections of the line between Upper Hutt and Masterton, as well as a section of line between Petone and Ngauranga.
Unlike the Hutt, the Wairarapa line was affected by several speed restrictions at the same time, causing "considerable delays to journey times", the spokeswoman said.