The Ministry for Primary Industries says it may never know the origin of a neurological strain of equine herpes which has so far killed seven thoroughbred horses.
The virus - a neurological strain of the common equine herpes virus type 1 - has struck in New Zealand for the first time, killing seven mares and leaving another six infected at a Waikato stud farm.
The farm is in lockdown. Authorities are refusing to name it, citing privacy concerns.
Andre van Halderen, principal adviser at the Ministry for Primary Industries, said the virus was difficult to diagnose and confirm which made the source hard to track.
"It could have come in at some stage through an imported horse or it could be a mutation that arose here," Mr van Halderen said. "I'm pretty sure we'll never be able to pin-point where it came from."