Staff had been swift to raise the alarm and an outbreak of the influenza B virus was confirmed from swab samples.
"The school were fantastic in reporting the illness so quickly," Dr Nesdale said.
She said the outbreak had spread beyond the junior classrooms and earlier this week there had been 24 pupils absent, not all of whom will have come down with the virus.
"This year there has been a low level of influenza across New Zealand and it's quite late in the season. The flu season is more July and August. So this is a late outbreak and because of those features, we wanted to make sure it was influenza," she said.
Dr Nesdale said parents should call their doctor or the Healthline on 0800 611 116 if they have concerns about the health of their child, or if the child also has a long-term health condition like asthma, diabetes, kidney, heart or immunity problems.
She said other Featherston schools and early childcare centres had been checked by public health nurses and were found to be so far clear of the disease.