The man, who has asked not to be named, said AUT's charge was a poor tax.
He said he noticed the $250 per semester fee when he was helping to organise his daughter's hostel booking for 2020.
"It's a poor tax. Anyone who doesn't happen to have a spare $11,000 in the bank to give to the university for advance rent gets hit an extra $500. I think it's inequitable and unfair," he said.
The man said he had not complained to the university directly because he did not want his complaint to have any impact on his daughter's experience at AUT.
He said people from rural areas had little choice about accommodation in university cities and no university should be penalising students for paying their fees in installments.