This was largely because of the evacuation zones that would be implemented, disrupting crucial north-south ground links through Auckland.
In the main scenario, ash was deposited on parts of the road and rail network in Auckland, which would likely cause some disruption for over a month.
"The volcanic activity in the scenario progresses from seismic unrest, through phreatomagmatic explosions generating pyroclastic surges to a magmatic phase generating a scoria cone and lava flows," the researchers reported.
"We find that most physical damage to transportation networks occurs from pyroclastic surges during the initial stages of the eruption."
The scenario also meant visibility would likely be reduced, and lower speed restrictions might have to be implemented to reduce the amount of ash being re-suspended into the air.
The amount of disruption to transportation and locations of impact would also strongly depend on wind directions and strengths at the time of the ash-producing eruptions.
In modified scenario explored by the scientists, there were "extended uncertainties" on the potential location of the volcanic vent.
In this case, large evacuation zones could remain in effect for longer than if an eruption did occur, and residents would therefore be displaced for longer periods of time.
The researchers said that working with transportation infrastructure providers and emergency management officials was "crucial" to help examine what might occur on Auckland's transport networks during an eruption and the subsequent recovery.
Much of Auckland is at risk - more than 50 volcanoes lie beneath a field stretching across 360sq km - and more than one million people live on areas where an eruption could occur.
An eruption from one of the Auckland Volcanic Field's many volcanoes could blast out an explosion crater 1 to 2km across, destroying everything in it, but planners believe people in its path would be evacuated well before an event.
Over recent years, researchers have published several major papers attempting to assess what a major eruption would mean for the city.
One study suggested a worst-case eruption near the CBD could cause a 47 per cent reduction in gross domestic product, while another 2015 paper found a catastrophic volcanic eruption in Auckland's industrial heart could have an economic impact of up to $10 billion in the first year - and knock out a large chunk of the city's GDP.
In that study, researchers said it was in the core industrial hotspots of Penrose, Onehunga, Otahuhu and East Tamaki where such a disaster would be most damaging to Auckland's economy, costing on average $8.3b (in 2007 dollar terms) in lost GDP from businesses, factories and supply chains being taken out.