In contrast, girls who slept eight hours a day showed no discernible change in their body-fat composition or waist size compared with girls who slept 10 hours a day.
Dr Skidmore said the key to the research, which drew on results from 386 boys and 299 girls from Otago, was that it looked at adolescents.
"Most of the research in this area to date has focused on younger children, whose parents tend to be stricter about bedtimes. Teenagers get more leeway over bedtimes.
"Our results suggest that for older teenage boys, making sure that they get adequate sleep may help to maintain a healthier a body. It seems to be that, within reason, the more sleep the better for boys.
"It was unexpected that we did not find the same result in girls, who may actually be more aware of their diet and more in tune with a healthier lifestyle."
The study ruled out out the effects of food choice and the number of screens, such as TVs and consoles, which the teenagers had in their bedrooms.
Overall, it found 19 per cent of the boys and 22 per cent of girls were overweight, and 8 per cent of boys and 6 per cent of girls were obese.
Both boys and girls slept on average for around nine hours and 15 minutes a day, with a quarter of teens sleeping for less than eight and a half hours, and another quarter sleeping for more than nine hours and 45 minutes.
Both boys and girls tended to sleep for an hour more at weekends than on weekdays.
The researchers used fat mass index as well as body mass index (BMI) for their calculations. The former is a measure of body fat, whereas BMI measures excess weight, and not necessarily excess fat, particularly in overweight adolescent boys.
Dr Skidmore said they found a link between BMI and sleep but it was not as strong as the relationship with fat mass.
"We think that in this group of growing adolescents that more direct measures of body fat are needed to pick up the subtle changes in your body when you are growing."
The study was published in the UK's Nutrition Journal.