Footage was posted to Twitter of the scuffle, and showed one protester being forcibly removed by the security team.
"Security got a handle on them ... they were giving as good as they got," Bond said.
The protest was organised by the Women in Film and Television group. Their founder, Sophie Mathisen, told the Guardian that they wanted to make a bold statement.
"AACTA purports to be a celebration of Australia screen excellence, and at the moment it's a celebration of a very, very narrow part of the industry.
"There are a huge number of women that are working outside of the system that don't even get a look-in."
The group is hoping to have gender parity in the Australian film industry by 2021. Only 37 per cent of films submitted to AACTA over 10 years were produced by women.
Female-led projects were big winners at the ceremony. Isla Fisher won the Trailblazer Award for international achievement, while the Elizabeth Debicki-led Kettering Incident got Best Mini-Series.
The awards were ultimately dominated by Mel Gibson, though, who claimed Best Direction and Picture for his war movie Hacksaw Ridge.