Not long after, Apple announced that Sir Jony had stepped back from day-to-day management of the design team to allow him to take a break.
In the years since, the 52-year-old is believed to have gradually shed even more responsibility.
"He's been at Apple over 25 years, and it's a really taxing job," an insider told Bloomberg.
"It's been an extremely tense 25 years for him at Apple and there's a time for everyone to slow down."Sir Jony has never been one to follow the rules or subscribe to the unquestioning enthusiasm shown by some Silicon Valley bosses.
He famously installed a speaker set-up in Apple's design office so that brainstorming meetings for the company's newest gadgets could be accompanied by Sir Jony's favourite work soundtrack: loud techno music.
In recent years, the design star has been spending more time in London after purchasing a private jet from the widow of late Apple founder Steve Jobs.
Cook is likely to have realised that Sir Jony was getting restless.
In 2013, he was put in charge of the design of Apple's software - something many see as a mistake.
With iOS 7, Ive upended the look and feel of the iPhone's apps.
His radical, colourful design was criticised as "confusing" and "ugly".
Even John Gruber, the Apple writer who is friendly with the company's executives, wrote that "under [Sir Jony's] control, we've seen the software design decline and the hardware go wonky".
Ive's departure may even be good news, Gruber suggested.
Apple's shift to focus on services over hardware left fewer avenues for Ive to unleash his design talent. He began working on side projects, such as a Christmas tree without any decorations for Claridge's, a blank magazine cover for Wallpaper magazine, and a minimalist ring carved from a single diamond.
The project that took up most of his time, however, was the design of Apple's US$5 billion ($7.5b) new office campus.
The building, which resembles a hollowed-out spaceship, has a park in the middle, and Sir Jony's obsessive design perfectionism throughout the building.
It officially opened this year and features custom-built door handles and glass roofs designed to stop water pooling on them. Clearly, it was a labour of love for Sir Jony.
There was a sign that Sir Jony may have recommitted to Apple in 2017 when he returned to his managerial role, but the excitement was short-lived.
With Sir Jony's departure now official, many are questioning what it will mean for Apple. Sir Jony has set up his own company, LoveFrom, which launches fully in 2020 with Apple among its first clients.
"While I will not be an [Apple] employee, I will still be very involved - I hope for many, many years to come," he told the Financial Times.
"This just seems like a natural and gentle time to make this change."
Nehal Chokshi, an analyst with Maxim Group, said that despite Ive's key role in Apple history, his departure will not hurt the iPhone maker.
"I would view it as Jony Ive looking to get paid market rates for his design expertise from Apple, with the right to allow other companies - not competitors to Apple - to leverage that expertise," he said.
Sir Jony was the totemic figure who represented Apple's rebirth following the return of Jobs in 1997. Under Jobs and Sir Jony's direction, the company released the iMac, iPod and iPhone, creating a trillion-dollar technology icon.
But times have changed for Apple, and the company is looking beyond Sir Jony's beautifully designed smartphones. It's a new era for Apple, and seemingly the perfect time for Ive to finally make his exit.
