The Ministry for Primary Industries has admitted it's unsure how long it will take to remove tonnes of oysters potentially infected with the Bonamia oestreae parasite in Big Glory Bay, Stewart Island.
Work has begun to remove what local farmers believe could be more than 4000 tonnes of oysters, to contain the spread of the deadly disease.
Ministry staff were on hand to watch local farmers and fishery staff remove dozens of oyster crates from Sanford's fisheries this morning.
The cages are being lifted on to the company's barge, before being hoisted on to a freight ship.
A chlorine solution is then applied to the cages to ensure they are cleaned.