Tommy Semmy brought Wanderers back into the game with a goal of his own, but it was the pin-point pass from Raheem Hunter which made the goal.
Hunter, who had fought off an opposition defender, was able to perfectly thread the ball to the feet of Semmy who's shot nestled in the back of the net.
The joy did not last long for Wanderers, as Shaker again put Manukau in the lead after an initial shot was saved by Hawke.
Semmy was, as usual, Wanderers' main focal point with chance after chance falling to his feet, but his shots were falling wide of the mark, except one that Manukau was forced to clear away.
At the start of the second half, Iwa Shaker scored his third and completed his hattrick, however it was a penalty shout for Wanderers that spoiled what was a great game.
Tommy Semmy was brought down in Manukau's box due to the clearest of fouls, however the referee failed to award the penalty much to the anger of the home supporters.
Wanderers were fighting back until that point, but after the call was not given, the game began to fall off in quality as both sets of players threw in challenges and halted play due to fouls.
The result leaves Melville United and Waikato Unicol as Hamilton's representatives in the next round of the Chatham Cup