MetService had placed a warning for the region from 6pm Thursday to 3pm Friday.
The heavy rain could cause streams and rivers to rise rapidly as well as cause surface flooding and potential slips.
The rain was a result of a humid easterly flow moving down from the north on Thursday and Friday, travelling to the upper fringes of the South Island by Saturday.
Auckland north of the city, Great Barrier Island and the Coromandel Peninsula were also under a heavy rain watch from 2am Friday to 3pm Friday.
The wet weather comes ahead of a cyclone developing around Fiji which was expected to hit New Zealand sometime next week.
It would be much bigger than Cyclone Fehi which struck the Pacific last week, Meteorological service WeatherWatch said.
MetService meteorologist Kyle Lee said MetService was aware of the cyclone forming and had a team of forecasters keeping an eye on it, but it was difficult to be precise as the cyclone was a week away.
MetService is the official Tropical Cyclone Warning Centre for New Zealand and continually monitors the tropics for developing lows which may have the potential to form into a tropical cyclone. We are in an active period so for more info visit our page https://t.co/YpdSlezO31 ^KL pic.twitter.com/Qy2ojxbxxW
Cyclone Fehi's power last week saw a state of emergency declared for Dunedin and the Buller District on the South Island's West Coast.
Felled trees and slips blocked parts of State Highway 6, stranding 115 motorists near Fox Glacier.
A further 600 tourists - some with medical issues - were stranded in Haast, blocked by a 100m long 9m high slip at Douglas Bluff south of Haast.
Friday's forecast
Whangarei: Rain. E. High 25C Low 21C Auckland: Rain. E. High 24C Low 20C Hamilton: Rain. E. High 22C Low 18C Tauranga: Rain. E. High 23C Low 20C Napier: Cloud to rain. E. High 22C Low 18C Wellington: Cloudy. High 24C Low 17C Christchurch: Cloudy. High 23C Low 14C Dunedin: Fine. High 20C Low 15C