The motive for the "targeted vandalism" was difficult to understand. Treatment and discharge systems were still functioning and no spills or leaks occurred, Mr McCall said.
It was thought the vandals had visited about 1am on the night of July 26.
Senior Sergeant Peter Robinson, of Kerikeri police, said there were no leads as yet but it appeared to have been a planned attack. The offenders also stole a truck battery from the site.
He urged anyone with information about the attack to call the Kerikeri station on (09) 407 9211 or Crimestoppers, anonymously, on 0800 555 111.
Treated effluent from the two plants is discharged into the forest because it is more environmentally friendly than discharging effluent into the water. Discharging even well-treated wastewater into the sea, where food is gathered, also runs counter to Maori custom.